First thing with any out-of-fuel situation will be air pockets. The ST normally will purge once you get it running again, but you never know. Be very thorough and even repetitive with your bleeding procedure.
Sometimes contaminated fuel can be forced through the system. If that happens it can cause stuck pump elements and even stuck injector nozzles. These can sometimes clear up, but sometimes not if there is water or sediment involved.
Best of luck with getting her back online.
dieselgman