I haven't reassembled it again yet, but could this be a reason for my none-start?
Almost certainly - although it may not be the
only reason, it's definitely a big factor.
Were there any shims under the old barrel? If so, you could remove them to reduce the height discrepancy. If not, then I can only surmise that either your piston is not original, or has been machined short. The only reason I can imagine your old barrel is so short is because it's previously been machined to fix a problem. I guess one other possibility - the conrod is shorter than standard.
Either way, assuming there's no shims to remove, the simplest solutions would be a) Machine the barrel down to match the original, or b) Acquire a marginally longer conrod. Or piston, if it looks like that's been machined.
Can you supply pictures and accurate measurements of the piston height & rod length? I have an LR1 buried at the back of my shed, which is mostly in bits.... I'm happy to do some measuring up if you like. Mine had "some" (2 or 3 as I recall) thin shims under the barrel, at a guess they'd add about 0.5 to 1mm height all in.
Cheers,
Ade.