In addition to Ronmar, there may be other issues as well. Pump timing, injector pop pressure (and so the spray pattern may be different), compression ratios (bump clearance/valve seat condition) may all be awry - one can never tell. They may each have a small effect but they can accumulate into a significant difference between the cylinders. An IR thermometer on the exhausts, when under load, may well give a good indication of balance between the cylinders.
Regards, RAB