Doug:
frankly there has been volumes written on the subject of port design and redesign.
the long and short of it, is more damage to flow can be done by getting in there and grinding out without knowing specifically what and where to grind.
if there is flashing, go ahead and grind it out, if it looks like a purposely placed part of the casting i wiould hesitate removing it.
if you have port to manifold mismatch, go ahead and match em up. i would grind on the intake more though. you never know when you are going to hit water in the head port.
got any pictures of the port and this particular detail?
bob g